This two-volume set constitutes the refereed proceedings of the 29th European Conference on Applications of Evolutionary Computation, EvoApplications 2026, held as part of EvoStar 2026, in Toulouse, France, during April 8&10, 2026, and co-located with the EvoStar events, EvoCOP, EvoMUSART, and EuroGP. The 40 full papers and 27 short papers presented in this book were carefully reviewed and selected from 106 submissions. These papers have been organized in the following topical sections: Applications of Evolutionary Computation, EuroGP & EvoApps Special Joint Track on Evolutionary Machine, Bioinspired Algorithms for Green Computing and Sustainable Complex Systems.